High-content screen using zebrafish (Danio rerio) embryos identifies a novel kinase activator and inhibitor

Bioorg Med Chem Lett. 2017 May 1;27(9):2029-2037. doi: 10.1016/j.bmcl.2017.02.068. Epub 2017 Feb 28.

Abstract

In this report we utilized zebrafish (Danio rerio) embryos in a phenotypical high-content screen (HCS) to identify novel leads in a cancer drug discovery program. We initially validated our HCS model using the flavin adenosine dinucleotide (FAD) containing endoplasmic reticulum (ER) enzyme, endoplasmic reticulum oxidoreductase (ERO1) inhibitor EN460. EN460 showed a dose response effect on the embryos with a dose of 10μM being significantly lethal during early embryonic development. The HCS campaign which employed a small library identified a promising lead compound, a naphthyl-benzoic acid derivative coined compound 1 which had significant dosage and temporally dependent effects on notochord and muscle development in zebrafish embryos. Screening a 369 kinase member panel we show that compound 1 is a PIM3 kinase inhibitor (IC50=4.078μM) and surprisingly a DAPK1 kinase agonist/activator (EC50=39.525μM). To our knowledge this is the first example of a small molecule activating DAPK1 kinase. We provide a putative model for increased phosphate transfer in the ATP binding domain when compound 1 is virtually docked with DAPK1. Our data indicate that observable phenotypical changes can be used in future zebrafish screens to identify compounds acting via similar molecular signaling pathways.

Keywords: Cancer; Compound library; Kinase; Notochord; Phenotypic screen; Somites; Zebrafish.

MeSH terms

  • Animals
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Benzoic Acid / chemistry
  • Benzoic Acid / pharmacology
  • Death-Associated Protein Kinases / metabolism
  • Drug Discovery / methods*
  • Drug Screening Assays, Antitumor / methods
  • Embryo, Nonmammalian / drug effects*
  • Embryo, Nonmammalian / enzymology
  • Enzyme Activation / drug effects
  • Enzyme Activators / chemistry*
  • Enzyme Activators / pharmacology*
  • Neoplasms / drug therapy
  • Neoplasms / enzymology
  • Protein Kinase Inhibitors / chemistry*
  • Protein Kinase Inhibitors / pharmacology*
  • Protein Serine-Threonine Kinases / antagonists & inhibitors
  • Protein Serine-Threonine Kinases / metabolism
  • Zebrafish / embryology*
  • Zebrafish Proteins / antagonists & inhibitors
  • Zebrafish Proteins / metabolism

Substances

  • Antineoplastic Agents
  • Enzyme Activators
  • Protein Kinase Inhibitors
  • Zebrafish Proteins
  • Benzoic Acid
  • Death-Associated Protein Kinases
  • Protein Serine-Threonine Kinases